Package index • CiteSource

All functions

CiteSource CiteSource-package: CiteSource: A package to compare sources of citation records

calculate_detailed_records(): Calculate Detailed Record Counts

calculate_initial_records(): Calculate Initial Records Unique Citations

calculate_phase_count(): Calculate phase counts, precision, and recall

calculate_phase_records(): Calculate Phase Counts with Precision and Recall

calculate_record_counts(): Calculate record counts function Calculate and combine counts of distinct records, imported records, and unique records for each database

citation_summary_table(): Contribution summary table

compare_sources(): Compare duplicate citations across sources, labels, and strings

count_unique(): Count number of unique and non-unique citations from different sources, labels, and strings

create_detailed_record_table(): Create a Detailed Record Table

create_initial_record_table(): Initial Record Table

create_precision_sensitivity_table(): Count and Precision/Sensitivity Table

dedup_citations(): Deduplicate citations - ASySD wrapper

dedup_citations_add_manual(): Remove pairs with manual dedup - ASySD wrapper

detect_parser() detect_delimiter() detect_lookup() detect_year(): Detect file formatting information

export_bib(): Export deduplicated citations to .bib file

export_csv(): Export deduplicated citations with source data as CSV file

export_ris(): Export data frame to RIS file

merge_columns(): Bind two or more data frames with different columns

parse_pubmed() parse_ris() parse_bibtex() parse_csv() parse_tsv(): Parse bibliographic text in a variety of formats

plot_contributions(): Create a bar chart that compares source contributions over stages

plot_source_overlap_heatmap(): Create a heatmap matrix showing the overlap between sources

plot_source_overlap_upset(): Create an UpSetR upset plot showing the overlap between sources

precision_sensitivity_table(): precision_sensitivity_table

read_citations(): Import citations from file

record_counts(): Record counts function Calculate and combine counts of distinct records and imported records for each database

record_counts_table(): record_counts_table

record_level_table(): Record-level table

record_summary_table(): search_summary_table

reimport_csv(): Reimport a CSV-file exported from CiteSource

reimport_ris(): Reimport a RIS-file exported from CiteSource

runShiny(): A wrapper function to run Shiny Apps from CiteSource.

synthesisr_read_refs() read_ref(): Import bibliographic search results

write_bib() write_ris() write_refs(): Export data to a bibliographic format