tag_lookup.Rdris-like bibliographic data files contain codes that describe their contents, such as 'AU' in place of 'author'. This function provides lookup tables for 'ris' tags of different kinds
tag_lookup(type = "ris")Which lookup table should be returned? Accepted values are 'ris', 'ris_write' or 'medline'
a data.frame containing the original tag (column 'ris'), and the full-word substitution for that tag (column 'bib'). For type 'ris', there is also an added 'order' column showing the order those tags should be displayed in. 'ris_write' is a version of 'ris' with only one ris tag per bib tag.
Primarily an internal function to support read_bibliography and write_bibliography. Tag substitutions for PubMed/Medline fields are taken directly from the NIH (available here). Substitutions for other ris-like formats are based on common examples, but are much less consistently documented.
tag_lookup("ris") # standard ris format
#> ris bib order
#> 1 TY type 1
#> 2 AU author 2
#> 3 A1 author 2
#> 4 A2 author 2
#> 5 A3 author 2
#> 6 A4 author 2
#> 7 A5 author 2
#> 8 AF author_full 3
#> 9 PY year 4
#> 10 Y1 year 4
#> 11 TI title 5
#> 12 T1 title 5
#> 13 JO journal 6
#> 14 T2 journal 6
#> 15 T3 journal 6
#> 16 SO journal 6
#> 17 JT journal 6
#> 18 JF journal 6
#> 19 JA journal 6
#> 20 VL volume 7
#> 21 IS issue 8
#> 22 EP pages 9
#> 23 BP pages 9
#> 24 SP pages 9
#> 25 AB abstract 10
#> 26 N2 abstract 10
#> 27 KW keywords 11
#> 28 DE keywords 11
#> 29 DO doi 12
#> 30 DI doi 12
#> 31 CN call_number 13
#> 32 SN issn 14
#> 33 UR url 15
#> 34 AN accession 16
#> 35 CY institution 17
#> 36 PB publisher 18
#> 37 PP pubplace 19
#> 38 AD address 20
#> 39 ED editor 21
#> 40 ED edition 22
#> 41 LA language 23
#> 42 U1 eppi_id 24
tag_lookup("medline") # PubMed files
#> ris bib
#> 1 AB abstract
#> 2 CI copyright_info
#> 3 AD affiliation
#> 4 IRAD investigator_affiliation
#> 5 AID article_id
#> 6 AU author
#> 7 AUID author_id
#> 8 FAU author_full
#> 9 BTI book_title
#> 10 CTI collection_title
#> 11 COI conflict_of_interest
#> 12 CN author_corporate
#> 13 CRDT date_created
#> 14 DCOM date_completed
#> 15 DA date_created
#> 16 LR date_revised
#> 17 DEP date_published_elec
#> 18 DP date_published
#> 19 EN edition
#> 20 ED editor
#> 21 FED editor_full
#> 22 EDAT date_added
#> 23 GS gene_symbol
#> 24 GN general_note
#> 25 GR grant_number
#> 26 IR investigator
#> 27 FIR investigator_full
#> 28 ISBN isbn
#> 29 IS issn
#> 30 IP issue
#> 31 TA journal_abbreviated
#> 32 JT journal
#> 33 LA language
#> 34 LID location_id
#> 35 MID manuscript_id
#> 36 MHDA mesh_date
#> 37 MH mesh_terms
#> 38 JID nlm_id
#> 39 RF references_n
#> 40 OAB abstract_other
#> 41 OCI copyright_info_other
#> 42 OID id_other
#> 43 OT term_other
#> 44 OTO term_owner_other
#> 45 OWN owner
#> 46 PG pages
#> 47 PS personal_name_as_subject
#> 48 FPS personal_name_as_subject_full
#> 49 PL place_published
#> 50 PHST publication_history_status
#> 51 PST publication_status
#> 52 PT publication_type
#> 53 PUBM publishing_model
#> 54 PMC pubmed_central_identitfier
#> 55 PMCR pubmed_central_release
#> 56 PMID pubmed_id
#> 57 RN registry_number
#> 58 NM substance_name
#> 59 SI secondary_source_id
#> 60 SO source
#> 61 SFM space_flight_mission
#> 62 STAT status
#> 63 SB subset
#> 64 TI title
#> 65 TT title_transliterated
#> 66 VI volume
#> 67 VTI volume_title